YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72494236, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.91
Transmembrane Helix	5	25	0.91
Non-Cytoplasmic	26	29	0.79
Transmembrane Helix	30	48	0.92
Cytoplasmic	49	60	0.72
Transmembrane Helix	61	81	0.89
Non-Cytoplasmic	82	106	0.91
Transmembrane Helix	107	131	0.90
Cytoplasmic	132	141	0.80
Transmembrane Helix	142	160	0.91
Non-Cytoplasmic	161	177	0.87
Transmembrane Helix	178	198	0.93
Cytoplasmic	199	232	0.94
Transmembrane Helix	233	255	0.90
Non-Cytoplasmic	256	268	0.89
Transmembrane Helix	269	292	0.90
Cytoplasmic	293	308	0.86
Transmembrane Helix	309	330	0.87
Non-Cytoplasmic	331	350	0.93
Transmembrane Helix	351	374	0.85
Cytoplasmic	375	387	0.65
Transmembrane Helix	388	407	0.93
Non-Cytoplasmic	408	426	0.89
Transmembrane Helix	427	451	0.89
Cytoplasmic	452	452	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFETIWPLIT VVIGIIVLLS LIIFLKLNTF ISLIITSVVT AILLGMPLDK IIETIENGMG  60
   61 STLGHIALIF GLGAILGKLL ADGGGATRIA DTLIKKFGHK HVQWAMLVAA FIVGIALFFE 120
  121 VGLVLLIPLV FTIAKRANVS KLKLGLPMVV ALSVTHGFLP PHPGPVVIAK ELQANLGHVL 180
  181 LYGIIIAIPV TLIAGPLFNK IAQKITPSAY GREGDISALG AQKEFTEEEM PGFGISFLTA 240
  241 VSPVILMLLS TIVQLVTGHE SATNGFESFI YFIGTAATAM LIAVLFAIFT MGIKQGRKNA 300
  301 DIMDSVSNAI YPIGMMILII GGGGTFKQVL IDGGVGDTIA KLFEGTEMSP ILLAWIVAAV 360
  361 LRIALGSSTV AAISSTGIVL PLLQASDVNV ALVVLAIGAG SVILSHVNDA GFWMFKEYFG 420
  421 LTVKETFLTW SLLETVISVS GLVFILILSI FV