YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282485, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLQTAGAE NNKPWNLLFF AWILATSGTL ISLFFSEIVQ LPVCVLCWYQ RIALYPLVIM  60
   61 LPLALFPFDV SIIRYASPLV IFGWFVALFH VLVVAGIIPE AAQPCVLGIP CSETHFNLLG 120
  121 FINIPVMSLI TFSLLGLLLF LAKKSFIQTN NKNT

Type	Start	End	Confidence
Cytoplasmic	1	16	0.89
Transmembrane Helix	17	36	0.94
Non-Cytoplasmic	37	51	0.72
Transmembrane Helix	52	72	0.89
Cytoplasmic	73	79	0.76
Transmembrane Helix	80	99	0.94
Non-Cytoplasmic	100	118	0.85
Transmembrane Helix	119	142	0.90
Cytoplasmic	143	154	0.93