YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282466, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.94
Transmembrane Helix	15	38	0.89
Non-Cytoplasmic	39	54	0.92
Transmembrane Helix	55	76	0.92
Cytoplasmic	77	90	0.88
Transmembrane Helix	91	111	0.95
Non-Cytoplasmic	112	136	0.90
Transmembrane Helix	137	157	0.93
Cytoplasmic	158	165	0.81
Transmembrane Helix	166	186	0.94
Non-Cytoplasmic	187	203	0.85
Transmembrane Helix	204	223	0.91
Cytoplasmic	224	235	0.79
Transmembrane Helix	236	258	0.93
Non-Cytoplasmic	259	266	0.87
Transmembrane Helix	267	288	0.91
Cytoplasmic	289	302	0.87
Transmembrane Helix	303	325	0.92
Non-Cytoplasmic	326	344	0.86
Transmembrane Helix	345	364	0.94
Cytoplasmic	365	383	0.93
Transmembrane Helix	384	406	0.93
Non-Cytoplasmic	407	432	0.92
Transmembrane Helix	433	456	0.85
Cytoplasmic	457	463	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLKYQSQA VAKPYFIFAM ILFVGQILFG LIMGLQYVVG DFLGGIIPFN VARMVHTNLL  60
   61 IVWLLFGFMG AAYYLVPEEA ETELYSPKLA IILFWVFAAA GVLTILGYLL VPYSTLADIT 120
  121 FNELWPTMGR EFLEQPTITK FGIVIVCLGF LFNLGMTILK GRKTAINMVM MTGLIGLAVF 180
  181 FLFAFYNPTN LALDKYFWWF VVHLWVEGVW ELIMGAILAY VLIKVTGVDR EVIEKWLYVI 240
  241 IAMALISGIL GTGHHFYWLM TPEYWQWVGS IFSALEPLPF FAMVLYAFNM VNRRRREHPN 300
  301 KAATLWALGT AVMAFLGAGV WGFLHTLSFV NYYTHGSQIT AAHGHMAFYG AYAMIVMTII 360
  361 SYAMPKLRGI GEANCNKAQV VEMWGFWLMT VAMVFITLFL TGAGILQVWL QRLPESGEAL 420
  421 SFMATQDKLA IFYWLREISG VIFLLGLISY ITSFFITEKK AQA