YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282464, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.47
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMALDNNHIL IIGGGTAGWL SAAILAKTLN SKNTDGVKVT LVESPTIPIL GVGEGTWPNL  60
   61 RATLHKIGIS ETDFIRECDA TFKQGAEFIN WSKTPEPKQS HSYYHPLSTV SHSSYDFNLA 120
  121 PYWLQQDKKT RLPYDRAVAS QARVCDEGLA PKQIVMAEYS AAQEYAYHLN ANKLAEFLKR 180
  181 HCVEKLGVKF VSANVTNVAL DNEDFITHVD TDHESEKKIF ADFFVDCSGA KGLIIKETYN 240
  241 TAWQSISDVI FNDTALAVQV PYADRNQKIN THTLATAQEA GWIWDIGLQD RRGVGHVFSS 300
  301 KYISDQKAEQ QLIDYLGDDY SDDLTIRKIK LNHGYHKKFW HKNSVAIGMS AGFVEPLEAS 360
  361 AIFLFDAAAN MLAAQFPRDK AQMKYAEDKF NQQLTMRMQR TVEFIKLHYC ISQRRDSQYW 420
  421 IDNCDPISIP DNLKQRLAFW QGQVPTKYDF ENAWEPFNLD SYLYVLYGMG FETDVAKVAA 480
  481 KYTETTKAKH LFNNIDKASV LLIDKLPKQR ELIEKVIKYG FTQV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.38
Transmembrane Helix	8	26	0.45
Non-Cytoplasmic	27	524	0.95