YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITTKKKSA KDRTKVKEQD VFVWHGVNRK GKKISGELSA KSIIELKNQL RKQGIVPSRV  60
   61 KKKAKPLFGL GSGDKAITPM DIAVITRQIA TMLGAGVPLV QTIEMIGKGH NNGKMRMLLG 120
  121 DIATKLSSGI PLSDCLRDHP LYFDDLYCDL VASGEQSGAL ETIYDRIATY KEKGEALKSK 180
  181 IKKAMTYPIA VLVVAFIVTS ILLIFVVPVF QEIFASFGAE LPAFTLMVIA ISEFMQAYWY 240
  241 FGLAGLYLAF FLFKRAHRNN QKLRDKVDKN ILKLPVIGDL LEKAAVARYA RTLSTTFAAG 300
  301 VPLIDALESA AGASGNAVFR DAILEVRAEV SSGMQMNLAM RNCKIFPDMV IQMVAIGEES 360
  361 GAVDDMLSKV ANVYEQQVDD AVDGLTALLE PMIMAVLGVV IGGLIIAMYL PIFEIGKIV

Type	Start	End	Confidence
Cytoplasmic	1	186	0.97
Transmembrane Helix	187	209	0.92
Non-Cytoplasmic	210	235	0.84
Transmembrane Helix	236	254	0.92
Cytoplasmic	255	391	0.79
Transmembrane Helix	392	413	0.91
Non-Cytoplasmic	414	419	0.63