YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282427, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	85	0.94
Transmembrane Helix	86	106	0.88
Cytoplasmic	107	119	0.85
Transmembrane Helix	120	142	0.93
Non-Cytoplasmic	143	148	0.87
Transmembrane Helix	149	171	0.78
Cytoplasmic	172	186	0.79
Transmembrane Helix	187	210	0.92
Non-Cytoplasmic	211	264	0.85
Transmembrane Helix	265	287	0.84
Cytoplasmic	288	302	0.68
Transmembrane Helix	303	320	0.72
Non-Cytoplasmic	321	326	0.73
Transmembrane Helix	327	346	0.92
Cytoplasmic	347	359	0.84
Transmembrane Helix	360	381	0.91
Non-Cytoplasmic	382	388	0.71
Transmembrane Helix	389	408	0.96
Cytoplasmic	409	423	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLATDFMGW IDKRLPVTDA WNKHLAQYPA PKNFNFWYFF GSLAMLVLVN QIVTGIWLTM  60
   61 NYEPSGDGAF ASVEYIMRDV DFGWLLRYMH STGASAFFVV VYMHMMRGLM YGSYQKPREL 120
  121 LWIFGMLIFL VLMAEAFMGY LLPWGNMSYW GAQVIISLFG AVPIIGDDLT LWIRGDYVIS 180
  181 GATLNRFFAL HVIAMPLVLV VLVFLHILAL HEVGSNNPEG VDIKKPKGSV KPEELSKFTF 240
  241 HKQYSEKYDI VDAVPFHPYY SVKDIMGVAG FLFLFCWVMF FAPEGGGYFM EAPNFTPANG 300
  301 LKTPEHIAPV WYFGPFYTIL RVVPDKLLGA VAMFGAIVML FALPWFDRGV VKSVRYRSKL 360
  361 HLVNLIQFAI CFVVLGALGT MPATPTANLI GVIASFGYFG FFIALWFYSK NENTKPVPER 420
  421 IAD