YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282418, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKVFHGPP GSYKSSTAMW FEIVPALRIG RVVVTNLQGI KTLEEIQREL KEVFPSTARL  60
   61 LRISIGNDTG MLLMRNFFHW LPIGALIFLD EIQDIYPNDK SFKASDYDYK TEGAFDDLLP 120
  121 QEFSEIYHEE QRKIKSNVNI EDYQDDIGES LFDERNYLRY PRTLRECFMR HRHYNWDILL 180
  181 ATPDIKEISS FIRSVCEVAY AHSSKDAIPI PYYKRRPRIL EHLPKTNGIS VGKNDIVTFK 240
  241 KVPLDVFKLY KSTATGKSTK SGAGQSPITP SVIVGFAFVV AYLVYMVFFF FDDESIEVDE 300
  301 PLANSLPNAI SQSPKASAAA VQVANASVRT AQKSDGEINP FSFRRASVST VTAPNNFVAL 360
  361 PFGATKMYIN AVNTVYFNKH RVTRDYVFTA YINDEVLNVG SESLIAMGYK IFFSSDCLVE 420
  421 LRSNNHSNYV YCEPTKPSEP FQEARGNSPI QLSLL

Type	Start	End	Confidence
Cytoplasmic	1	267	0.54
Transmembrane Helix	268	289	0.68
Non-Cytoplasmic	290	455	0.76