YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71148031, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFTILGILI LISAYFSGSE TGMMSLNRYR LRHLEKQKHR GAKRVSKLLA RPDRLIGLIL  60
   61 IGNNLVNVFA SLVAGVIFNR YFGDAGILYA GLVLTLVILI FAEVTPKTLA ALYPEQVAFP 120
  121 SSIVLSLLLK ILFPIVVVVN WITNGILRLL GVSSEQREQH SLSSEELRTV VNESGALLHQ 180
  181 RDQDMLVSIL DLEKVSVEDI MIPRSDLVGI DVNDDWKKIQ KQLTQANHTR VLLYRDSIDD 240
  241 VVGYIHARDA LKLLSKNQFN KATLLRAVRE LYFVPEGTPL NIQLLKFQHA KERIGLVVDE 300
  301 YGDIQGLVTL EDILEEIVGD FTTTMTPTTS DEVTLQPDGS YLVDGSASIR DINKEMSWQL 360
  361 PTDGPKTLNG LIIEYLEEIP KSNISLRISG YPVEIIDVAG NKIKTVRVMP EHFIDESPEE 420
  421 E

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.82
Transmembrane Helix	6	26	0.85
Cytoplasmic	27	54	0.90
Transmembrane Helix	55	78	0.90
Non-Cytoplasmic	79	84	0.88
Transmembrane Helix	85	105	0.92
Cytoplasmic	106	125	0.79
Transmembrane Helix	126	147	0.85
Non-Cytoplasmic	148	421	0.98