YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147867, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFIELTGV NQDLLVYLAI DVSIAILLLG AMRFLSGLSA KVNSTDELAK EDNFAFGISV  60
   61 AGSVLALGIV LTGAITGESA SSYAMEAIGM LAYGGYGLIL IKVGRIIHDK IALQHLDKNA 120
  121 LIIEKNLTIG IIDAAGAIAT AIIIRAVLLW VDGLDLSTFI AITSGFIVAQ TMLVIITRLR 180
  181 ERQYAKNNQE DCLQEALSNG QLALAIRYSG QVISTALAVT AASHFLIYSP ETLVVNLLGW 240
  241 LVFGIGMTLL VALLSAIAKR IVLWGINLVE EVDQQHNIGV ASIEMATSIA IALILTALMA 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.98
Transmembrane Helix	14	35	0.91
Cytoplasmic	36	53	0.91
Transmembrane Helix	54	75	0.95
Non-Cytoplasmic	76	83	0.80
Transmembrane Helix	84	106	0.88
Cytoplasmic	107	126	0.94
Transmembrane Helix	127	149	0.92
Non-Cytoplasmic	150	155	0.89
Transmembrane Helix	156	177	0.92
Cytoplasmic	178	207	0.92
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	236	0.81
Transmembrane Helix	237	258	0.92
Cytoplasmic	259	277	0.87
Transmembrane Helix	278	298	0.87
Non-Cytoplasmic	299	300	0.72