YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147811, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDSSIQWE HSHDFGLDNK LHENKVKTVF WLTTVIMVLE IGAGTWSGSM ALLADGWHMG  60
   61 THSAAFLIAI FAYSYAKKHA NNKDFSFGTG KVNSLGGFAS AIALAIVALM MIVESVQRLL 120
  121 EPQSIHFNEA IVVAIIGLVV NVASVFILHD DHHHHGEHHH DHDHNMKAAY FHVLADTLTS 180
  181 LLAIVALLIG KYVGLIWMDP LMGIVGAIVI LRWSYGLIKD SSNVLLDKSV KKSTLEQISK 240
  241 ALSKKNTVIN DIHVWTIATA HQAAILKVTS AQPLNSDEYE GILREILPQL SHISIEIRHD 300
  301 YSL

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	57	0.72
Transmembrane Helix	58	76	0.93
Cytoplasmic	77	91	0.88
Transmembrane Helix	92	113	0.90
Non-Cytoplasmic	114	129	0.79
Transmembrane Helix	130	148	0.98
Cytoplasmic	149	167	0.93
Transmembrane Helix	168	189	0.94
Non-Cytoplasmic	190	195	0.77
Transmembrane Helix	196	216	0.92
Cytoplasmic	217	303	0.96