YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282044, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTIPNQITL FRIVLIPIFL IIFYLPLSWS NFGAFAVFWL AAVSDILDGY LARKLNQSSA  60
   61 FGAFIDPVAD KLMVVVALVM IAQDYSSWLV SIAAIIMIAR EVFISALREF MSSIGKRDII 120
  121 AVSNMGKYKT AAQMLGIMGL IWQPSYDIPL ILFYLPHEVI NYLSYAFYSI ATVLTVTTWV 180
  181 SYFKAAWPEL KGQ

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	27	0.89
Non-Cytoplasmic	28	31	0.60
Transmembrane Helix	32	52	0.57
Cytoplasmic	53	59	0.50
Transmembrane Helix	60	81	0.50
Non-Cytoplasmic	82	86	0.68
Transmembrane Helix	87	107	0.86
Cytoplasmic	108	124	0.92
Transmembrane Helix	125	146	0.79
Non-Cytoplasmic	147	163	0.77
Transmembrane Helix	164	183	0.94
Cytoplasmic	184	193	0.88