YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282034, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	35	0.84
Non-Cytoplasmic	36	44	0.87
Transmembrane Helix	45	67	0.86
Cytoplasmic	68	78	0.89
Transmembrane Helix	79	101	0.89
Non-Cytoplasmic	102	138	0.85
Transmembrane Helix	139	158	0.91
Cytoplasmic	159	179	0.88
Transmembrane Helix	180	201	0.88
Non-Cytoplasmic	202	211	0.86
Transmembrane Helix	212	234	0.92
Cytoplasmic	235	245	0.78
Transmembrane Helix	246	268	0.87
Non-Cytoplasmic	269	296	0.95
Transmembrane Helix	297	319	0.88
Cytoplasmic	320	326	0.88
Transmembrane Helix	327	350	0.91
Non-Cytoplasmic	351	370	0.87
Transmembrane Helix	371	394	0.87
Cytoplasmic	395	404	0.86
Transmembrane Helix	405	424	0.93
Non-Cytoplasmic	425	721	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLVNLYKKL SPFQRVIIAL ILGISTGIFV GEPAGDIKVI GDVYIRLLQM TVLPYVLVSI  60
   61 IGGLGRLDST MASRIGYRAV KVIVIMWLSV MATLLLLPLA YPNWETAGFF STSMLAEPAA 120
  121 FNFVKLYIPS NIFASLSETI VPAVVLFSLL MGIALIQVKN KETLLTLTTN IGDSLMKVAS 180
  181 YVAKLAPLGI FAISASAAGT LEVEELGRLQ VFLWVYITAA ALLAFVFLPL LIHWATPFSY 240
  241 REILSTAGEA VITALATGTV LVVLPMIIER SKALLAKHGM ECEETDSTVD VLVPTAYSFP 300
  301 STGTLLGLGF ILFSAWYVGS PLGFDDYISF VIMGALTAFG SMAVAIPFLL DFFDLPADQF 360
  361 QLYLLGSVVT ARFATGLAAL HGFVVTLLVA SAVLKKLRWH RMMQAIGVHL AVTLGVMIAA 420
  421 GFTLKSLIPY KYEGVQTFES MKSMNASANL DQYKELTPLG YFEQQQPRLE VILARKGIRV 480
  481 GYNDASLPYA FRNKDNKMVG FDVELLNQFA KDLDINLSMI RIEEGADEAE LLADGSIDII 540
  541 IGGHVITPKR ALKMAFSDAY TFHTAGLLVT DAKRDQFSDL YTIQAMKTLK LGVGNSKYYQ 600
  601 DMVKEYLPNA QLTEVNNVRQ FLKGNYEDVD ALIYSTESAS AWAMLYPNYS AIIPKGLKLR 660
  661 APVAFVLPKG QLDYVQYMNT WLKLKKENGL QKKVYDYWIL GKNPEAKKPR WSVMKDVLGW 720
  721 L