YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_COLP3
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLEIIILA LLQGLTEFLP ISSSAHLILP SQVLGWQDQG LAFDVAVHVG TLLAVMMYFR  60
   61 KELGVMAVAW LGTVGVGPEK GRGGFDAKLS WWILLATIPA GLFGLLGKDF IEEHLRSALV 120
  121 IAMTTLLFGF LLGFADIKAG KRTEHKPMEK LGLKGAMLIG LAQAVALIPG TSRSGITMTI 180
  181 GLMLGLSRDN AARFSFLLSI PAIAMAGSYL TLKLILSTES VDWFAMGLGS LLAFVSAYAC 240
  241 IHYFLILLEK LGMMPFVIYR LILGVGLLWF IL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	29	0.83
Non-Cytoplasmic	30	39	0.85
Transmembrane Helix	40	59	0.79
Cytoplasmic	60	88	0.83
Transmembrane Helix	89	107	0.95
Non-Cytoplasmic	108	114	0.76
Transmembrane Helix	115	135	0.91
Cytoplasmic	136	150	0.85
Transmembrane Helix	151	172	0.84
Non-Cytoplasmic	173	190	0.79
Transmembrane Helix	191	212	0.90
Cytoplasmic	213	222	0.75
Transmembrane Helix	223	246	0.91
Non-Cytoplasmic	247	251	0.81
Transmembrane Helix	252	271	0.91
Cytoplasmic	272	272	0.92