YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147735, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEKGLTLV ELMISLSIGL VLFAGVLSVF VGMRSTTAET STYGELQENG RFAISVLTDD  60
   61 LLRQDFWGDY AGRFSTSNLI SIPAAGSVGN DCIGGGVNNA TFPLAVGHFR TIWGQTLTAV 120
  121 APNPLGCFVT PVNTRTRPNS DVIQLKRVLG TPNLAPAAAT FYLRTNHTTG GIFRGNALPV 180
  181 INNTRTWEYQ HHVYYVREDI VGNNFVPVLM QGRLANGNMV FNPIVDGIEV IRFMYGIDTN 240
  241 GDGVVNSYIS ASGGNMTDAL WDNAGGSRIL AVKVYVLARS IAPDMKYTNT NSYQLGDLAI 300
  301 APVNDNFRRL LFSSTITLYN AR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.62
Transmembrane Helix	12	32	0.78
Non-Cytoplasmic	33	322	0.89