YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.79
Transmembrane Helix	7	25	0.95
Cytoplasmic	26	35	0.86
Transmembrane Helix	36	57	0.91
Non-Cytoplasmic	58	81	0.91
Transmembrane Helix	82	103	0.93
Cytoplasmic	104	116	0.82
Transmembrane Helix	117	135	0.94
Non-Cytoplasmic	136	150	0.82
Transmembrane Helix	151	171	0.91
Cytoplasmic	172	180	0.72
Transmembrane Helix	181	199	0.93
Non-Cytoplasmic	200	236	0.90
Transmembrane Helix	237	257	0.92
Cytoplasmic	258	263	0.83
Transmembrane Helix	264	286	0.89
Non-Cytoplasmic	287	293	0.83
Transmembrane Helix	294	315	0.89
Cytoplasmic	316	333	0.84
Transmembrane Helix	334	351	0.94
Non-Cytoplasmic	352	357	0.71
Transmembrane Helix	358	378	0.92
Cytoplasmic	379	405	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAWLSAGIL FTFAAIAFVL YRWGNIRCVG VTPVKTFTFI AILFTSGLDV GLIMFPLTEF  60
   61 AGYADLVASP EYSFTNALSI EFGFWAFLIW GFYFLTCFYF CVIEPRVQFF QLPLIKLINN 120
  121 VVIIGTCAFT AYLLLTNLPW YVPELGDGES IIGSFYLIVF LVIAAAVYSS TSIRYVRLLS 180
  181 LATTWLFIGL IALMWGGAFL SEGSSIGEFA STIALLGGYF GNIHEFVLPL NDYHEFYLYW 240
  241 WFAWSIMIGQ FTARFVGGLR TYQVLGAMLI FPSIPIAIWF TVLYYYSANG LETAGFYNIM 300
  301 MAIVGVTFVI NSLDSLIRLY TDNLNLSVNR VGKVKYFLGN IIVLSLLTLL FKLDFLQIQW 360
  361 VGAVVIGLFF TCFGYILLTK FKVVSEIECS PKENKIDFNK IELIN