YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147618, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITEVPLII NGEKVRSQTT EWLDVLNPAT QEVVARVPIA TAEEIELAVQ SAQTAFKTWS  60
   61 KTSLTNRMRI MVNFAHLVRE NTQELAELVT LEHGKTLPDA EGEVGRALEA IENASSVTRL 120
  121 QLGDMGNNVA TGVDTYTLHK PLGVGLGITA FNFPLMLAAF MFPPAIACGN TFVLKPSEQA 180
  181 PSSTVRFVEL AIEAGLPAGV INVVHGGPDA VNALIEHEHV KAVSFIGSTH VGTHIYNHAS 240
  241 KHGKRAQSMM GAKNHMVIMP DANKDRAIND LLGSAFGAAG QRCMANPVTI LVGKSRDWLP 300
  301 EIVERAKLMK VGPGSQRDAD LGPVVSPQAK KRIISLLDSG VEQGATMLID GRNCQVEGYP 360
  361 NGNFVGPTLF TNVTTDMDIY TQEIFGPALC VLEAETLEEA IAIINANPNG NGTSIFTSSG 420
  421 WNARLFENEI DVGQVGINVP IPVPVAFFSF TGSRASKLGD LGPNGKQTVS FWTQTKSVTA 480
  481 RWFEPDHEDG LNVHTTISMK

Type	Start	End	Confidence
Cytoplasmic	1	147	0.55
Transmembrane Helix	148	167	0.51
Non-Cytoplasmic	168	500	0.96