YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147616, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLIIAATF GILFSVTTLL SFTAVASGPS IHLDKANNDL SDKESLKKGF KTYLNYCLGC  60
   61 HQLQYQRYNR TFDDLGIDKA DGVANFMPTG DKVGGHILNT MPEKEAAKWF GSAPPDLTLE 120
  121 ARLRSPDWIY TYLRSFYIDE SRPFDVNNTV FKDVGMPHVL QSLQGVSTLV VHKELDEHGE 180
  181 EHEVSSLSPA MGGSLTAEEY DVVVRDLTNF LEYVGEPNKL ERKALGYWVL AFLFFFFIIS 240
  241 YFLKKEYWKD VH

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	223	0.99
Transmembrane Helix	224	243	0.94
Cytoplasmic	244	252	0.92