YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.54
Transmembrane Helix	5	21	0.66
Cytoplasmic	22	27	0.57
Transmembrane Helix	28	44	0.85
Non-Cytoplasmic	45	54	0.79
Transmembrane Helix	55	74	0.92
Cytoplasmic	75	82	0.82
Transmembrane Helix	83	106	0.89
Non-Cytoplasmic	107	112	0.71
Transmembrane Helix	113	132	0.92
Cytoplasmic	133	144	0.92
Transmembrane Helix	145	168	0.88
Non-Cytoplasmic	169	175	0.86
Transmembrane Helix	176	197	0.92
Cytoplasmic	198	215	0.87
Transmembrane Helix	216	237	0.91
Non-Cytoplasmic	238	283	0.83
Transmembrane Helix	284	309	0.81
Cytoplasmic	310	322	0.87
Transmembrane Helix	323	344	0.91
Non-Cytoplasmic	345	353	0.71
Transmembrane Helix	354	373	0.92
Cytoplasmic	374	655	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYFEILAI LTCAVFVVWL FRRLNLPAIL AYLVAGMLVG QHGLNLVQDQ VDYDHFAELG  60
   61 IVFLLFTLGL EFSLPRLMAM RHLVVSVGSL QVGISLLVFI IAGLFFGLSF SEAFVVGSIL 120
  121 ALSSTAIVIR QLSETGAMKR KSGQLSVAIL LFQDVAVVPL LIIIPMLAMD SQSSMVWALM 180
  181 LAMVKGVVVV ALLLLIGKWL LPKVFNIIAQ VRTDELFVLT TLLVTLLAAA FTQWFGLSMA 240
  241 LGAFLAGMML SESEYKHQLE ADIRPYRDIL LGLFFITVGM KLDVSLLISS PFSLLGLMLC 300
  301 FMLVKIMVIK ILAVKAGESS KDAWASGLML AQMGEFGFVL IALANQSQIL PLDVASMLLG 360
  361 AGVISMAITP FMINNARSWA LFLSQEKSPE SLDLSQLPEN KVLENHVVIC GFGRVGQTVS 420
  421 RFLKQDEIDF VAIDVDPLRT QKAREAGEKV LFGSSRQTEV LNAAHLSEAK LVVIAFGDDK 480
  481 QSLEVIQKVR SMNEKVPILV RTRNDDQLDA LQAAGANEVV PESLEGSLML VSQVLSLTGV 540
  541 PFSRIMRRVQ RERKNHYNHL HGFFQGEHTD MSPQAIDRIE FAHAILINDN SFSCGKSIES 600
  601 LNLGKMRVNV VALRRGDIEC ESPGKDTVLQ AQDTLIIRGK PRGVEKADHY VQEGK