YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281862, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.93
Transmembrane Helix	16	36	0.92
Cytoplasmic	37	53	0.91
Transmembrane Helix	54	75	0.93
Non-Cytoplasmic	76	94	0.89
Transmembrane Helix	95	117	0.90
Cytoplasmic	118	126	0.79
Transmembrane Helix	127	147	0.95
Non-Cytoplasmic	148	183	0.94
Transmembrane Helix	184	206	0.90
Cytoplasmic	207	215	0.95
Transmembrane Helix	216	236	0.93
Non-Cytoplasmic	237	317	0.98
Transmembrane Helix	318	338	0.94
Cytoplasmic	339	350	0.87
Transmembrane Helix	351	373	0.92
Non-Cytoplasmic	374	401	0.93
Transmembrane Helix	402	423	0.87
Cytoplasmic	424	457	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETLMLSRI QFAANISFHI LFPTITIALS WFLFFFKLRF VQTGEPVWMR AYRFWVKIFA  60
   61 ITFAIGVVTG ITMSFQFGTN WPKFMETVGN IAGPLLGYEV LTAFFLEAGF LGIMLFGMNR 120
  121 VSARVHTLAT LIVAIGTTLS AFWILALNSW MQTPQGHEMR DGVAFPVDWL AIIFNPSFPY 180
  181 RLSHMVVASG LTAAFLVAGI SAYRLLKGDD KQAPKLTLKI ALTVAMFLTP LQIFIGDMHG 240
  241 LNTLEHQPQK IAAMEGVWHT EKGAPLLLFA IPDEQEKTNH FELAIPNMAS FILTHDLQGE 300
  301 IKGLNEFEGN HPPVAPLFYA FRVMVGVGML MLIISWAGRI QLWRNKPLPR WLLKVLVAMS 360
  361 FSGWLATLAG WYVTEIGRQP WLVTGILTVK DAATDIAPGN VALSLSLYLI LYVVLMTAYL 420
  421 HTLFTMANRA VEIEEITDDE KVKPVIISMT AKENNYV