YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281844, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVRHCPLL ILGSGPAGYT AAVYAARANL KPVMITGMQQ GGQLTTTTDV ENWPGDADDL  60
   61 TGPALMERMQ KHAEKFDTEI IFDHIESVDF SSKPYKLTGS SEYTCDALII CTGASAQYLG 120
  121 LPSEEAFMGR GVSACATCDG FFYKNQKVAV VGGGNTAVEE ALYLSNIASE VHLIHRRDTF 180
  181 RSEKILTDRL YEKVANGNIV LHTDRTLDEV LGDNMGVTGL RLKEMGSDAT EELEVSGVFI 240
  241 AIGHKPNTDI FKDQLDMKDG YLTIQSGTQG NATQTSVEGV FAAGDVADHI YRQAITSAGA 300
  301 GCMAALDSER YLDAL

Type	Start	End	Confidence
Signal Peptide	1	25	0.89
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	315	0.99