YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281756, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	40	0.70
Non-Cytoplasmic	41	56	0.65
Transmembrane Helix	57	76	0.91
Cytoplasmic	77	84	0.93
Transmembrane Helix	85	108	0.91
Non-Cytoplasmic	109	113	0.79
Transmembrane Helix	114	135	0.91
Cytoplasmic	136	149	0.90
Transmembrane Helix	150	170	0.92
Non-Cytoplasmic	171	179	0.86
Transmembrane Helix	180	204	0.79
Cytoplasmic	205	217	0.85
Transmembrane Helix	218	235	0.94
Non-Cytoplasmic	236	238	0.59
Transmembrane Helix	239	259	0.58
Cytoplasmic	260	266	0.55
Transmembrane Helix	267	286	0.55
Non-Cytoplasmic	287	292	0.75
Transmembrane Helix	293	314	0.91
Cytoplasmic	315	326	0.84
Transmembrane Helix	327	346	0.89
Non-Cytoplasmic	347	354	0.75
Transmembrane Helix	355	374	0.92
Cytoplasmic	375	534	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSILVIIAI SLTIASVINI ILTKFSISHI IGYIITGTVV STLFDFNGSK NLHSLDLIGE  60
   61 FGIVFLMFTI GLEMSFSKLD KMKKLIFYNG FVQMAFSALI IFIIAFYAFT LDAVSSLVIA 120
  121 LSFSLSSTAI VLPYLKKSKD IVTPYGERSV AILVFQDLAV IPILLLMSFL SNNELSLTDV 180
  181 LLKTLLYASG IIIFMFTIGK KIIAWLLHFS SKARMEELFL SSVFTIVLGA SLFAHEMGFT 240
  241 YSLGAFIAGM IIAETKFHIK VESDISSYKD LLLGAFFFSI GTKINIEYFI SHLHWVLGIL 300
  301 VLVMMIKAII IYMLMRKQLN KSDSIKSAVA LCQVGEFSFA IFALAMNQDI IADELGSFLI 360
  361 LITVLSMILT PFMVNNIYKI ASVFVVEYFE ADNIATVKTT NHTIVCGFAV LGRIVAKELS 420
  421 KREAKFLIIS DNLQHVLLAR KRGYDAYFGH LDKLPVLESL NVDQTSSIII TVNTLKNKQI 480
  481 ICESVLDYYP DANLVVKVNT IEEKAALADI NIRSFVHAQQ ETAELLVKQS IVEF