YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281713, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGIPKESF LGERRVAAAP SSVSALIKLG FTVQVQKGAG TKASFTDQEF SDANAEIVTK  60
   61 KACWQSEILF KVNAPTLEEV ELMNDGSTLL SFIAPAQSSE LLEALRSKSI TTLAMEMVPR 120
  121 MTRSQPMDAL SSMANIAGYR AVIEASHHFG RFFTGQITAA GKMPPAKVMI IGAGVAGLAA 180
  181 LGTAGSLGAI VRAFDTRPEV KEQIESMGAE FLELDYEEPE DTGSGDGYAK EMSKAFIDAE 240
  241 MVLFAEQAKD VDIIITTAMI PGRPAPKLIT EKMVESMKAG SVIVDLAAAG GGNCECTVVG 300
  301 KVVDTYGVKV IGYTDLVSRL PNQASQLYAN NLMNLTKLLC KNKDGTLDID FDDVVIRNMT 360
  361 VVKENEITFP PPPIQVSAAP VKKATVEAAE PIEEAASPIK KYAFIGAGIA LFGWVASIAP 420
  421 ADFLTHFTVF VLACVIGYYV VWNVSHSLHT PLMSVTNAIS GIIIVGALLQ IGSDNIVVQI 480
  481 LATLATLVAT INIVGGFKVT SRMLKMFSK

Type	Start	End	Confidence
Cytoplasmic	1	128	0.84
Transmembrane Helix	129	143	0.70
Non-Cytoplasmic	144	168	0.74
Transmembrane Helix	169	191	0.88
Cytoplasmic	192	401	0.97
Transmembrane Helix	402	418	0.95
Non-Cytoplasmic	419	423	0.75
Transmembrane Helix	424	442	0.95
Cytoplasmic	443	451	0.76
Transmembrane Helix	452	471	0.94
Non-Cytoplasmic	472	477	0.77
Transmembrane Helix	478	500	0.90
Cytoplasmic	501	509	0.96