YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281626, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	40	0.90
Non-Cytoplasmic	41	47	0.75
Transmembrane Helix	48	68	0.94
Cytoplasmic	69	88	0.88
Transmembrane Helix	89	111	0.90
Non-Cytoplasmic	112	120	0.80
Transmembrane Helix	121	144	0.88
Cytoplasmic	145	154	0.90
Transmembrane Helix	155	176	0.94
Non-Cytoplasmic	177	188	0.85
Transmembrane Helix	189	212	0.89
Cytoplasmic	213	227	0.87
Transmembrane Helix	228	251	0.91
Non-Cytoplasmic	252	264	0.82
Transmembrane Helix	265	288	0.84
Cytoplasmic	289	297	0.89
Transmembrane Helix	298	320	0.92
Non-Cytoplasmic	321	328	0.80
Transmembrane Helix	329	350	0.94
Cytoplasmic	351	375	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVNVENVEP ELNIEIGPNW FASVMGTGII ANAAVGLPMV GQYLGQAGLV IWVIASLMLI  60
   61 VMLLLKAVQT ITNPHIIKRQ FNDPVMAQFF GAPPMALLTI AGGTLLFGHH FFAQDTLMVI 120
  121 AWSLWITGTI VGMMTAVIIP YRLFTHHEVR GDAAFGGWLM PVVPPMVSAA IGAMFIPHVQ 180
  181 DTLLQQTLLY ACYAMFGTSL IAAMIILTLI WGRLVHSGTS GGARVPTLWL VLGPLGQSIT 240
  241 AAGALGAVAL AVVEQPIAGS LNTMAILYGV PVWGFAFYWS ILASFLTLRA LRRKMPFALT 300
  301 WWAFTFPVGT CVTGTTQLAL HTGLPAFEWA AVILFAGLLC AWVIAALGTI KGIKTGHIMK 360
  361 NPVSSPVIIA KKGPR