YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147357, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	26	0.95
Cytoplasmic	27	32	0.65
Transmembrane Helix	33	51	0.88
Non-Cytoplasmic	52	60	0.59
Transmembrane Helix	61	82	0.92
Cytoplasmic	83	102	0.74
Transmembrane Helix	103	122	0.87
Non-Cytoplasmic	123	127	0.61
Transmembrane Helix	128	149	0.87
Cytoplasmic	150	155	0.61
Transmembrane Helix	156	173	0.79
Non-Cytoplasmic	174	200	0.88
Transmembrane Helix	201	223	0.91
Cytoplasmic	224	234	0.84
Transmembrane Helix	235	253	0.95
Non-Cytoplasmic	254	260	0.70
Transmembrane Helix	261	283	0.86
Cytoplasmic	284	322	0.98
Transmembrane Helix	323	342	0.90
Non-Cytoplasmic	343	368	0.83
Transmembrane Helix	369	388	0.93
Cytoplasmic	389	402	0.88
Transmembrane Helix	403	424	0.89
Non-Cytoplasmic	425	450	0.78
Transmembrane Helix	451	472	0.85
Cytoplasmic	473	481	0.70
Transmembrane Helix	482	503	0.82
Non-Cytoplasmic	504	507	0.69
Transmembrane Helix	508	526	0.84
Cytoplasmic	527	536	0.77
Transmembrane Helix	537	558	0.91
Non-Cytoplasmic	559	564	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITLQALLA FMPIALSAIL LIGLHWPAKK AMPVVYTVTA AIAFFAWEMS FNRIVASSLQ  60
   61 GLMITIAVLW IIFGAIMLLN TLQHSGAILR IRAGFTNISP DRRVQAIIIA WLFGCFIEGA 120
  121 SGFGTPAAIA APLLVAIGFP AISAVMIGMM IQSTPVSFGA VGTPIIIGVS SGLDKSNLTE 180
  181 QLIANGSSWE QFLRLITSEV AIGHAIVGTL MPLFMVVMLT RFFGQNKSWK EGFEIAPFAI 240
  241 FAGLAFTVPY ALTGVFLGPE FPSLIGALVG MAIVVPLAKR GFLMPKKAWD FAPKEQWPAH 300
  301 WLGKISFKQD NSEAKKSMSL TRAWLPYLLV AIILVLSRVS TEFKALLKSL SFGFSNILGE 360
  361 VGISASVQPL YLPGGILFFV CILTLFLHQM KFKQVVDAAK QSTTTLVGAG FVLIFTIPMV 420
  421 RILINSGVNG ADLAAMPVAM ASFVAQTFGD LYPLFAPSIG ALGAFIAGSN TVSNMMLSQF 480
  481 QFEVANALSV SGALLVALQA IGAAAGNMIA IHNVVAASAT VGLLGQEGRT LRKTILPTIY 540
  541 YVIAVGVLGL IAINVFNISD PLLG