YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281587, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKFLQFPV IDPIIFSIGP VSLRWYGTMY LIGFLAAMFM ANKAADRSNG LWTRDQVSDV  60
   61 LFYGFLGVIL GGRVGYVLFY QFEYFLSDPL YLFEIWQGGM SFHGGLLGVI LAVFIFARKT 120
  121 NKSFLAVGDF VVPLVPIGLG MGRLGNFINA ELWGRQTDVS WAMVFPTDPL QVPRHPSQLY 180
  181 EFALEGVVLF AILYIISRKT RSLGLASGTF LIGYGVFRSI VEFFREPDAH LGLYFSFISK 240
  241 GQILSIPMIL AGILIIYLGY LSQQKSAIAQ GDKALAAGGK SGKKTVKGNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.93
Transmembrane Helix	21	41	0.88
Cytoplasmic	42	59	0.88
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	94	0.92
Transmembrane Helix	95	117	0.87
Cytoplasmic	118	124	0.86
Transmembrane Helix	125	145	0.90
Non-Cytoplasmic	146	177	0.91
Transmembrane Helix	178	196	0.91
Cytoplasmic	197	202	0.84
Transmembrane Helix	203	221	0.91
Non-Cytoplasmic	222	240	0.82
Transmembrane Helix	241	261	0.92
Cytoplasmic	262	290	0.94