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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71281538, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKLNKSSFI VFFFLQSFFL QNGMAENLPT DLVTWAHANP VVHIGVDGTF PPFDYIDEQG  60
   61 VTAGAGKLIR QQLSAILPVD LQETSVSDFR LEYDDMLRGN IDAISVCGNI EQRRDEVLFT 120
  121 KPFLQMTPIV VVNKNSDIKS EMDITSELKI ASIAGYADAN FAKQLSVNSK GLSSNLQGYQ 180
  181 SIESGKYDVF ITYLYLYKYM LKKHDFKNIK PIAISQFESL PIGFCVNKNK PQLVGLLNWG 240
  241 IDQLGDDFIL AMQSKWAESS LDEGQNSRAH IDKSISLTSV FIYAVIFVLL ALFFARKFAS 300
  301 TIAIKLDTLA FRTTYFTVLI LIISLSTGGI YLFLNDFKDQ LLIDQKETFN VTRDVTKKTL 360
  361 AGWYRERELL AHNIAKSKSF KRLVNQLVIA SEIDDTIKLA QAKKALRVYF SKRPYTTQGG 420
  421 RAYTITDVQG RYLLNLVQSA EGKKSPIISQ RPELFNEVLM GRTEFIPPVW ANVNIDGNRN 480
  481 AEDKDAEVFI ATPVRNEQQE IIAVLGFRFD PDREFSQLFI DGRLGKSFES FAVDSRGYMI 540
  541 SSSRFTSELQ QKGIVPAGES TVLNVRLQNP ETNPIVQAAK FKLNGQNLHG YTNYRGKTVV 600
  601 GQWISLKNSN ITVVSEIELS EMLAEYYDVR NLLLIGLIIS SAFILSISIF MITISNRAND 660
  661 ISRRSQQELA EQVTIRTKEL AASEQKSKLI NSSVADGILG VDKLGHFIFA NESATKITGY 720
  721 SEEQILSSDL ISLFAGDNKE NLTFEDTEVY KAIQSKEVIR ISNEYVLMSG ARELPLEYSI 780
  781 SPVEDDESEL ACVIALQDIT LRVQETERLE KMLEHLPVCM VIMNQNDEVE QINQTGIELL 840
  841 GFERDEIVGN PVDLFIPQEQ VESHKALLKK FFQEETVIDT RSLERDFKVK HKSGKLIEIQ 900
  901 AVYTPVHFHN GLYAAVMVRD ITLDRQAEFA LLEAKRISDD ASKAKSDFLA NMSHEIRTPM 960
  961 NAIMGMSHLA LGCELDRKPK NYVTKVYKAA ESLLGIINDI LDFSKIEAGK LDIEVIEFSL1020
 1021 HDTFADLANI IGLKAGEKNL ELLFDISPDV PVNLKGDPLR LNQILINLAG NAVKFTEQGQ1080
 1081 VVISVNVVTN VSTSHCDDIN LEFSVKDSGI GMDDEQQKKL FQSFSQADSS TTRKYGGTGL1140
 1141 GLTISKKLVE LMNGQIWLES KAGEGSCFSF TTTLQVSDVI DNRLVEQQKS FLADKRILIV1200
 1201 DDNLLALDVL SSILKSFHCH VVAANSGEEA IELVKQATLT FDFIMLDWNM PDLDGIETYH1260
 1261 IIKSQNNYQD NQFILVTSNA NDNEAVDQLK KRINSVLVKP VTSSSIFDEM MRLNGDEAYS1320
 1321 NTREMKRDDE LIQNQQHLSG AKILLVEDNE LNQELALELL KQSNIDVELA ENGAIAVEKF1380
 1381 SSRHFDGILM DLQMPVMDGF TATKIIRESD SSIPIIAMTA NAMVSDKEKV LASGMNDHIT1440
 1441 KPINVNTMFA TIAKWVSPSI KLDHDIDKAK LSVYTLPEKV ISIPDFNTIN TSAGLAVANG1500
 1501 NKSLYVKLLG RFVSGQDDFV ERFKVAMLKQ DKEEVTRFAH TLKGSAGNIG ANALQGYADQ1560
 1561 LELVCANDAN TDELVNLLDQ VTEELTLVLN ELTEYLAKEN SVESTAPIND FNFNEEFTVQ1620
 1621 LAQLLELIEN FETESIELAE DILNQLKGTK QEALFEKIYQ QIESYEFTEA ETALNEFIDV1680
 1681 LNN

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