YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147272, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAQLLQQQL LQQQLLLQNT QNQDDEIDLA ELWRAIWAGK FTIIIISMTF AIASVFFALS  60
   61 KPNIYKASAI LAPASSKGGA GGLGALAGQF GGLASMAGIN LGGGGGDKTA LALEIIKSRS 120
  121 FIENFITKHN LLVPLMASKN WDMESDTLIL NEELYDKANN KWIRAVKVPK KPEPSPWEAY 180
  181 KKLSELLTVS QDKVTSMVNI DIEFYSPKIA QQWLTWLIQD INEFMREQDQ IEAKASIDYL 240
  241 TKQLANIKVS TMETVFYQLI EEQTKNMMLT MVKKEYILKT IDPAQVPDLK DKPKRALIAV 300
  301 LGTMLGGILS VLIVLIRYFA KK

Type	Start	End	Confidence
Cytoplasmic	1	36	0.92
Transmembrane Helix	37	59	0.89
Non-Cytoplasmic	60	79	0.80
Transmembrane Helix	80	103	0.75
Cytoplasmic	104	296	0.92
Transmembrane Helix	297	319	0.92
Non-Cytoplasmic	320	322	0.78