YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.81
Transmembrane Helix	20	39	0.91
Non-Cytoplasmic	40	44	0.61
Transmembrane Helix	45	61	0.86
Cytoplasmic	62	67	0.70
Transmembrane Helix	68	89	0.82
Non-Cytoplasmic	90	94	0.53
Transmembrane Helix	95	117	0.84
Cytoplasmic	118	124	0.79
Transmembrane Helix	125	146	0.90
Non-Cytoplasmic	147	157	0.82
Transmembrane Helix	158	180	0.86
Cytoplasmic	181	186	0.71
Transmembrane Helix	187	209	0.85
Non-Cytoplasmic	210	227	0.76
Transmembrane Helix	228	249	0.78
Cytoplasmic	250	309	0.89
Transmembrane Helix	310	330	0.94
Non-Cytoplasmic	331	337	0.73
Transmembrane Helix	338	359	0.94
Cytoplasmic	360	369	0.82
Transmembrane Helix	370	388	0.91
Non-Cytoplasmic	389	393	0.74
Transmembrane Helix	394	411	0.88
Cytoplasmic	412	441	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPSLDKSS FNQPSWRNAL AGLQMLFVAF GALVLMPLIT GLDPSVALFT AGIGTILFQF  60
   61 ITKQQVPLFL ASSFVFIAPI AYSVQTWGIA VAMGSLFVTG LVYVLIASVV AVRGAGFLHK 120
  121 LMPPVVTGPI IMVIGLSLAP IAVNMAMGKA GDGSAVLFPY ADSLIVSMSA LITTLLVATL 180
  181 GKGIFRLIPI MAGVFVGYIM ASVMGMVSTE AIANSEWFAI PNFVTPEFNL TAILFMLPVA 240
  241 IAPAIEHVGD IIAIGSVTGK DYTKSPGLHR TLLGDGLATS LASLFGGPPN TTYSEVTGAV 300
  301 MLTKMFNPKI MLWAAAFAIG LAFVAKFGLA LQTIPAPVMG GILILLFGSI AGVGMNILIK 360
  361 AQVDLAEQRN LVIVSTTLVF GIGGMAIGND DFSLTGISLC GLVAIALNAI IPQTQLEEES 420
  421 LVQEETIVED LVEHAKGKEI N