YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBB_COLP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYLSNITTS QRPWLLLALA ALGLELSALY FQYVLGLAPC IMCVYQRLAI LAIFSAGAIG  60
   61 AIGHQNIVAR ILAYVLWGVG AIWGLIIALE HVEMQKNSGS LFFSCEFIPN FPTWAPLHEW 120
  121 IPFLFEATGD CGEISWRFFN YSMPQWMVVV YALFSIVFSI VLINRLVCAK KP

Type	Start	End	Confidence
Cytoplasmic	1	13	0.52
Transmembrane Helix	14	35	0.90
Non-Cytoplasmic	36	42	0.46
Transmembrane Helix	43	64	0.88
Cytoplasmic	65	70	0.45
Transmembrane Helix	71	92	0.88
Non-Cytoplasmic	93	145	0.75
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	172	0.94