YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETLFIRLG SQAHDTVHWL VVAETSSNTQ EIIASGELKG AQQLSELTSK ADKRQVKILV  60
   61 PGCDVLLKSL KVPAKSSRAI RLATPYMLED SLAEDVEQLF FAYADLASDE QGNNCFTAIV 120
  121 AHSQMQQWLS WLADADIETD TILPDVLAMP IVAEGWSAIA LGDANQEQVI VRQKLWQGFN 180
  181 VDANAWQLQC QTSAKQSENA EGNEQSHSIL IEAYSPLAHS EQCNVSTMPE ELALALMATN 240
  241 YDSKLSHFNL LQGQYKVKEN RSHTGRQWLW VAGVAMFAIL LSLGHKSAQL WQLNAEQENI 300
  301 QQNIVASYKK AFPKTKRVRI STIKSQLNRE LALLGGVGDR QGFLAMLAKL QPAFAKVPAL 360
  361 KPESLKFDGK RQELRIQATA KDYQAFEQFS VALATTNLIV KQGSQSNQGD QVTGSFSITN 420
  421 KGSTKGATKR SNNKKGSAKQ RSNASNKEAS

Type	Start	End	Confidence
Cytoplasmic	1	267	0.71
Transmembrane Helix	268	285	0.83
Non-Cytoplasmic	286	450	0.85