YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA_COLP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	39	0.93
Non-Cytoplasmic	40	44	0.88
Transmembrane Helix	45	66	0.87
Cytoplasmic	67	84	0.88
Transmembrane Helix	85	107	0.86
Non-Cytoplasmic	108	114	0.58
Transmembrane Helix	115	133	0.92
Cytoplasmic	134	139	0.83
Transmembrane Helix	140	158	0.88
Non-Cytoplasmic	159	165	0.64
Transmembrane Helix	166	186	0.75
Cytoplasmic	187	212	0.73
Transmembrane Helix	213	229	0.76
Non-Cytoplasmic	230	235	0.54
Transmembrane Helix	236	256	0.84
Cytoplasmic	257	266	0.77
Transmembrane Helix	267	284	0.87
Non-Cytoplasmic	285	287	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRIQQKWL AIKLITRMDK PIGTYLLLWP TYWALWIASD GWPNLQLLLV FSLGVFIMRS  60
   61 AGCVINDYAD RKIDGEVERT KNRPLVNGMM TSGEAINLFG VLIGMAFGLV LMLSWSTIYL 120
  121 SVVAVLLAAI YPFMKRHTQL PQLFLGAAFS WGMIMAFSEA QGEIPLVAWL LFTANLCWTI 180
  181 AYDTMYAMVD RDDDVKIGVK STAILFAEND KRVIGFLQLM TLALLWTVGD ILAFGWPYQL 240
  241 CIIAAAGLFS YQQLLIVNRE RDACFQAFLH NHWVGLVVFV GIAIEYL