YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147097, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	31	0.85
Non-Cytoplasmic	32	36	0.69
Transmembrane Helix	37	57	0.86
Cytoplasmic	58	76	0.87
Transmembrane Helix	77	96	0.95
Non-Cytoplasmic	97	107	0.82
Transmembrane Helix	108	130	0.84
Cytoplasmic	131	145	0.81
Transmembrane Helix	146	166	0.92
Non-Cytoplasmic	167	177	0.83
Transmembrane Helix	178	199	0.89
Cytoplasmic	200	228	0.93
Transmembrane Helix	229	250	0.93
Non-Cytoplasmic	251	260	0.84
Transmembrane Helix	261	283	0.90
Cytoplasmic	284	291	0.85
Transmembrane Helix	292	310	0.97
Non-Cytoplasmic	311	316	0.84
Transmembrane Helix	317	338	0.93
Cytoplasmic	339	357	0.91
Transmembrane Helix	358	381	0.90
Non-Cytoplasmic	382	400	0.91
Transmembrane Helix	401	425	0.85
Cytoplasmic	426	443	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTIREKIAY GLGDTASNII FQTVMMFLLI FYTDVVGLSP ALVGTLFLVV RLFDAITDPL  60
   61 MGAMADRTKT RWGQFRPYIL WLAVPFGIIS VMAFTTPDFS YNGKVVYAFA TYTLLMIAYT 120
  121 AINIPYSALG GVLTAEPSER VSVQSYRFVL GMLGGLIVAA STLPLVEWFG EGDKAKGYQL 180
  181 TMMAMSLLGV VLFLLCFSGT NERVSTPAEQ KTSFFDDLRS LWKNDQWRIL CLAGLFLLTG 240
  241 QVLRATLAIY YVKYVLNLEQ YITLFITLGM IGSILGCALA QPLAKKVCKI KAYITLQLIA 300
  301 AFICVISYFV PKEYDIMAFA LFFLWSFFLQ MATPLLWAKM ADTIDYGHWK TGVRITGMVY 360
  361 SAVVFFIKLG VAFGGAFAGW LLAYYGYQAD VEQTEATQQG ILLSFTVYPA IGSILVALVM 420
  421 RWYVLDNKRV EQIHGELNEA QQA