YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281296, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.76
Transmembrane Helix	9	36	0.84
Non-Cytoplasmic	37	50	0.70
Transmembrane Helix	51	75	0.80
Cytoplasmic	76	85	0.73
Transmembrane Helix	86	106	0.86
Non-Cytoplasmic	107	110	0.57
Transmembrane Helix	111	128	0.90
Cytoplasmic	129	137	0.75
Transmembrane Helix	138	160	0.89
Non-Cytoplasmic	161	173	0.75
Transmembrane Helix	174	193	0.94
Cytoplasmic	194	220	0.86
Transmembrane Helix	221	240	0.90
Non-Cytoplasmic	241	245	0.74
Transmembrane Helix	246	265	0.85
Cytoplasmic	266	277	0.78
Transmembrane Helix	278	298	0.92
Non-Cytoplasmic	299	316	0.86
Transmembrane Helix	317	336	0.92
Cytoplasmic	337	340	0.68
Transmembrane Helix	341	364	0.80
Non-Cytoplasmic	365	368	0.62
Transmembrane Helix	369	388	0.73
Cytoplasmic	389	397	0.65
Transmembrane Helix	398	419	0.90
Non-Cytoplasmic	420	426	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGLILFAIA LVFLFFGYSV AFTFAGISVI VGVLTLGVDL FAFMPYRIMS IMENTILMAI  60
   61 PMFVFMGIVL QKTGLAERLL ESSAKLFGTI PGGLAISTII VGALLAASTG VVGASVVAMG 120
  121 VISLPVMLKN NYHQPTAAGV ICASGTLGQI IPPSIILIIL GDVMGVPVGD LFKAAVVPGF 180
  181 LLILGYTVYI LILGKFKPEY CPAMVVTENK RDLLIQAAKD IVPPLILILS VLGSIFSGIA 240
  241 TPTESASIGA VGAMVLAKFY GSFSFKNINE ISLETVKVTS MIFAVLIGAT AFSMVFSYSG 300
  301 SEYLIEEFFL DLPGDKWTFL IIAMVAILVL GFFIDFIEIA FLVVPILTPV AIAFNIDLVW 360
  361 FAVLISMNLQ TSFLTPPFGF SLFYLKGVAP KGFKTTTIYK GVIPFILIQI TVLLLVLLFP 420
  421 EQLIFF