YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281258, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.71
Transmembrane Helix	27	46	0.86
Non-Cytoplasmic	47	51	0.44
Transmembrane Helix	52	72	0.75
Cytoplasmic	73	76	0.47
Transmembrane Helix	77	95	0.71
Non-Cytoplasmic	96	100	0.55
Transmembrane Helix	101	123	0.86
Cytoplasmic	124	129	0.69
Transmembrane Helix	130	149	0.78
Non-Cytoplasmic	150	177	0.81
Transmembrane Helix	178	197	0.94
Cytoplasmic	198	227	0.94
Transmembrane Helix	228	249	0.92
Non-Cytoplasmic	250	255	0.80
Transmembrane Helix	256	277	0.82
Cytoplasmic	278	280	0.64
Transmembrane Helix	281	301	0.72
Non-Cytoplasmic	302	315	0.60
Transmembrane Helix	316	334	0.81
Cytoplasmic	335	357	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSMRPCG DFRTSYKQDN TIFETKTIRW VTIFTIIALC FAPLVVDGYF ITLLIQISYL  60
   61 GIAALGLNIL VGYTGQISLG HGAFFGFGAF ASAWLNTSLH IPVFLCIPLA GFLTMGVGMM 120
  121 FGAPAARIKG LYLAIATLAS QFIIEDFFAR ADWFSGGASG SMAEPVSLFG FAFDTDQSFY 180
  181 YIALFSLVFM FIWGCNLMRS RDGRAFVAVR DHYLSAEIMG VKLNKYRLLS FGISSFYAGI 240
  241 GGALYAHYLG YVSAEGFTIM MSIQFLAMII IGGLGSIKGT LMGVIFMVFL PEVLESGVGV 300
  301 MKMTDWGNIP MVVDGLAYIK EMAIGLVIIG FLIFEPEGIA HRWTQIKNYW KFYPFAY