YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281242, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	36	0.85
Non-Cytoplasmic	37	50	0.75
Transmembrane Helix	51	70	0.88
Cytoplasmic	71	82	0.74
Transmembrane Helix	83	105	0.87
Non-Cytoplasmic	106	109	0.63
Transmembrane Helix	110	128	0.91
Cytoplasmic	129	138	0.74
Transmembrane Helix	139	160	0.91
Non-Cytoplasmic	161	173	0.76
Transmembrane Helix	174	193	0.95
Cytoplasmic	194	220	0.90
Transmembrane Helix	221	240	0.95
Non-Cytoplasmic	241	245	0.86
Transmembrane Helix	246	266	0.94
Cytoplasmic	267	277	0.84
Transmembrane Helix	278	298	0.92
Non-Cytoplasmic	299	316	0.86
Transmembrane Helix	317	334	0.96
Cytoplasmic	335	340	0.66
Transmembrane Helix	341	364	0.84
Non-Cytoplasmic	365	370	0.63
Transmembrane Helix	371	388	0.74
Cytoplasmic	389	397	0.61
Transmembrane Helix	398	420	0.86
Non-Cytoplasmic	421	426	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGIVLFAIA LVCLFLGYSV AFTFAGVSLI VGAIVLGADL FAFMPYRIMS IMENTILMAV  60
   61 PMFIFMGIVL QKTGLAERLL ESAAKLFGGI AGGVAISTII VGALLAASTG VVGASVVAMG 120
  121 VISLPVMLKN NYHQPTATGV ICASGTLGQI IPPSIILIIL GDVMGVPVGD LFRAAILPGM 180
  181 LLVVTYVIYI LILGKFKPEF VPPLVVTENK RELLVQALKD IVPPLVLILT VLGSIFAGIA 240
  241 TPTESAAIGA VGAVILSILY GSFSFGKMHE ISKETVKVTS MVFAVLIGAT AFSMVFSYSG 300
  301 SEYLIEEFFM ELPGGKWTFI ALAMLAILIL GFFIDFIEIA FLVVPILLPV AIALDINLVW 360
  361 FAILISMNLQ TSFLTPPFGF SLFYLKGVAP KYLKTTTIYK GVIPFILMQI AVLLLVVFFP 420
  421 EHLIIT