YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	35	0.84
Transmembrane Helix	36	56	0.93
Cytoplasmic	57	68	0.90
Transmembrane Helix	69	91	0.91
Non-Cytoplasmic	92	135	0.83
Transmembrane Helix	136	158	0.88
Cytoplasmic	159	183	0.74
Transmembrane Helix	184	204	0.92
Non-Cytoplasmic	205	236	0.46
Transmembrane Helix	237	260	0.88
Cytoplasmic	261	275	0.54
Transmembrane Helix	276	298	0.90
Non-Cytoplasmic	299	331	0.55
Transmembrane Helix	332	354	0.84
Cytoplasmic	355	395	0.89
Transmembrane Helix	396	418	0.94
Non-Cytoplasmic	419	424	0.79
Transmembrane Helix	425	446	0.59
Cytoplasmic	447	455	0.53
Transmembrane Helix	456	480	0.86
Non-Cytoplasmic	481	483	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYKNIIRIL GLLVGLLSVT MLPPALISLI YRDGGGLPFI LAFLWCICTG FLAWYPHRFE  60
   61 KTDLKAREGF LIVVLFWLVL ASFSAIPLML LEEPNLSTAD AFFESFSGLT TTGATILNHI 120
  121 DDLPHAVLWY RQQLQWLGGM GIIVLAVAVL PMLGIGGMQL YRAETPGPVK DSKMTPRIAD 180
  181 TAKHLWYIYL GLTIACALAY WLAGMSGFDA ICHAFSTIAI GGFSTHDASM GYFNSPTINL 240
  241 VCVTFLLIAG VNFALHYAAV QSRSVRSYFF DPEFKVFIGI QIVLTVICFT VLLATGTYQD 300
  301 VDQALDQALF QSVSISTTAG FATTSFADWP TLLPMLLIFS SFIGGCAGST GGGMKVVRVV 360
  361 LLYLQGLREL NKLVHPRAIF SIKLGRKVLP DRIVEAVWGF FSAYAAVFVI CMLLLLAAGM 420
  421 DDITAFTAVA ACINNLGPGL GEVAANFSSI NDMSKWVLIM AMLFGRLEIF TLLVLFTPAF 480
  481 WRS