YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146924, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSVNEPLK NKVAAQLNLF YLALSFFTRL PVPKTMHYSE ALLNKANRYF SLVGLVTGLL  60
   61 LALSYVCFST FLPANISILL TMTISLLLTG AFHEDGLADM ADGIGGAFTI EKRLTIMKDS 120
  121 RIGTYGAVTL VMALLLKFTL LVKLAEQDSN HLLLAILLAE VLSRAVAGSL ISSMPYVSDI 180
  181 EQSKSKPLAQ AQSSSELTIL LLIGLAPLIF YSSEVIFSLL IVLVLFRWLF KQWLMARIGG 240
  241 FTGDCLGAGQ QLSELLIYLT IVSYINKDVF IEVALTGHNF MGHSLTGHSF MGIVG

Type	Start	End	Confidence
Cytoplasmic	1	12	0.68
Transmembrane Helix	13	32	0.56
Non-Cytoplasmic	33	48	0.37
Transmembrane Helix	49	69	0.88
Cytoplasmic	70	70	0.29
Transmembrane Helix	71	93	0.64
Non-Cytoplasmic	94	121	0.56
Transmembrane Helix	122	141	0.93
Cytoplasmic	142	150	0.51
Transmembrane Helix	151	171	0.73
Non-Cytoplasmic	172	202	0.72
Transmembrane Helix	203	230	0.82
Cytoplasmic	231	295	0.78