YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	50	0.81
Transmembrane Helix	51	70	0.92
Cytoplasmic	71	81	0.80
Transmembrane Helix	82	104	0.90
Non-Cytoplasmic	105	110	0.66
Transmembrane Helix	111	131	0.91
Cytoplasmic	132	147	0.86
Transmembrane Helix	148	168	0.94
Non-Cytoplasmic	169	186	0.93
Transmembrane Helix	187	208	0.92
Cytoplasmic	209	220	0.89
Transmembrane Helix	221	240	0.89
Non-Cytoplasmic	241	244	0.59
Transmembrane Helix	245	263	0.70
Cytoplasmic	264	273	0.65
Transmembrane Helix	274	295	0.72
Non-Cytoplasmic	296	300	0.81
Transmembrane Helix	301	324	0.91
Cytoplasmic	325	331	0.93
Transmembrane Helix	332	355	0.87
Non-Cytoplasmic	356	364	0.79
Transmembrane Helix	365	384	0.81
Cytoplasmic	385	610	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEMAVIYLA AAIIAVPIAK RVGLGSVLGY LLAGILIGPF LLGLVGDQTD VMHFAEFGVV  60
   61 MMLFLVGLEL QPSRLWKLRH SIIGLGGLQV VVTTLLISAA CYTILSLAWQ TSLAIGLMLA 120
  121 LSSTAIVLQT LNEKGWIKQE AGQNAFSVLL FQDIAVIPIL ALVPLLAFSD NISDSGSHGN 180
  181 LIEHFPVYIQ TAISVGVIAA IILAGKYVSA PLFRYIAETR LRELFTVFAL FLVIVIAVIM 240
  241 QKIGLSPALG TFLAGVVLAE SEFRHELEVD IEPFKGLLLG LFFITVGASI DFPLLFEELG 300
  301 LVTLLVVSLI AIKAAVLFLL SILFKMEKKQ KLLFTLALAQ GGEFAFVLLS LTSSLQILTP 360
  361 EQSKITTLVV AISMLMAPVL LIFYEKVLDK EAENAREFDK PEDIEATKSV IIAGYGRFGQ 420
  421 IVGRLLGSQG YHLSILDHSP TQIDLLKKFG NKVFYGDAAR KDLLEASGAQ EAQLLVIAID 480
  481 DADKIIEIAQ LAQKHYPNLQ IVARAIDRHH AYELIRIGVK TIKRETFESA LGLGVSALEL 540
  541 LGNSQESAKR AGQLFSEHDR ESMHVLSEVW GDDHSYGVAV KQRMELLKQV LVSDEEEQSK 600
  601 IQTCQKSPEA