YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281124, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	31	0.93
Non-Cytoplasmic	32	37	0.81
Transmembrane Helix	38	57	0.94
Cytoplasmic	58	71	0.86
Transmembrane Helix	72	94	0.87
Non-Cytoplasmic	95	110	0.77
Transmembrane Helix	111	132	0.88
Cytoplasmic	133	196	0.49
Transmembrane Helix	197	218	0.89
Non-Cytoplasmic	219	237	0.70
Transmembrane Helix	238	256	0.79
Cytoplasmic	257	263	0.77
Transmembrane Helix	264	284	0.93
Non-Cytoplasmic	285	313	0.90
Transmembrane Helix	314	333	0.92
Cytoplasmic	334	352	0.86
Transmembrane Helix	353	372	0.78
Non-Cytoplasmic	373	412	0.65
Transmembrane Helix	413	432	0.87
Cytoplasmic	433	438	0.59
Transmembrane Helix	439	461	0.92
Non-Cytoplasmic	462	502	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKNIIKPS LFMAILPIIL TLTILGIQLF YYGDFTPHIP LAIGIAITAT LGWFRGYRWD  60
   61 DMEKGVMHVI RVGLPSIAIL MTVGMIVGVW IASGTVPALI YYGLKVLNPE IFLAAAMVLC 120
  121 AVVSVSLGTS WGTTGTVGLA LMGIGSGFDV PMYWTAGAVV SGAFFGDKIS PLSDTTNLAP 180
  181 AVTGVNLFDH IRNMLPTTVP AMLIALVIYI FVGFNLIGSN EVDFSKIEAI TNGLESNFNI 240
  241 SLLVLLPPLL VIVLALKKMP ALPSLFAGVL AGALLAIFVQ GASLHEIFNF MQSGYKIETG 300
  301 VSEIDGLLNR GGVQSMTWVI TLVVIALGFG GVLERTKCLE TIITAILSRV KSFFGLQASA 360
  361 TGAAIATNLV AGDPYLSIAL PGRMFAPAYV DKGYSKLNLS RAVEEGGTLI SPLIPWNAGG 420
  421 AFVITALGLG IAEGNIENLL YIPLAFACWL SPLIGLTYAA LGRFSPKMSA EELDRYQREE 480
  481 EEISENKTVE VRKGANMSAK HA