YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.68
Transmembrane Helix	5	24	0.88
Cytoplasmic	25	32	0.63
Transmembrane Helix	33	54	0.91
Non-Cytoplasmic	55	96	0.71
Transmembrane Helix	97	120	0.83
Cytoplasmic	121	172	0.79
Transmembrane Helix	173	195	0.91
Non-Cytoplasmic	196	200	0.69
Transmembrane Helix	201	221	0.71
Cytoplasmic	222	260	0.60
Transmembrane Helix	261	275	0.75
Non-Cytoplasmic	276	276	0.00
Transmembrane Helix	277	291	0.71
Cytoplasmic	292	293	0.38
Transmembrane Helix	294	315	0.66
Non-Cytoplasmic	316	352	0.65
Transmembrane Helix	353	376	0.89
Cytoplasmic	377	388	0.83
Transmembrane Helix	389	412	0.88
Non-Cytoplasmic	413	414	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGALRGVL GIFVLLAIAY ALSSGKKSIN IRTVGLAFAL QVLLGAFVLY VPFGKDVLLS  60
   61 MTNGVQSVID SAKVGINFLF GGLGTDAMFD NGVGFVFAIR VLPNIIFFSS LIAVLYYLGI 120
  121 MQWVIKIIGG ALQKLLKTSK PESLSATANI FVGQTEAPLI IRPYIAKMTQ SELFAIMVGG 180
  181 LASVAGSILA GYAGLGIELK YLIAASFMAA PGGLLMAKII CPETEHDKIV TESVDYDDEN 240
  241 EKPTNVIDAA ASGAASGLKL AVNVGAMLLA FIALIALLNS LIGGVFGLFG YEDITIEFFL 300
  301 GYLFAPFAYV IGVPVNEMLQ AGSFIGQKVV VNEFFAYVNF VEIKDTLSPA TQAIVTFALC 360
  361 GFANLSSIAI LLGGIGSMAP SRRHDIARLG MRAMIAATLA NLMSAAIAGI FISL