YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146849, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.79
Transmembrane Helix	7	26	0.87
Cytoplasmic	27	33	0.79
Transmembrane Helix	34	54	0.91
Non-Cytoplasmic	55	76	0.84
Transmembrane Helix	77	100	0.90
Cytoplasmic	101	107	0.85
Transmembrane Helix	108	126	0.93
Non-Cytoplasmic	127	132	0.74
Transmembrane Helix	133	152	0.92
Cytoplasmic	153	162	0.89
Transmembrane Helix	163	185	0.93
Non-Cytoplasmic	186	204	0.95
Transmembrane Helix	205	226	0.90
Cytoplasmic	227	235	0.74
Transmembrane Helix	236	256	0.89
Non-Cytoplasmic	257	278	0.88
Transmembrane Helix	279	298	0.94
Cytoplasmic	299	304	0.91
Transmembrane Helix	305	326	0.91
Non-Cytoplasmic	327	331	0.86
Transmembrane Helix	332	354	0.92
Cytoplasmic	355	374	0.93
Transmembrane Helix	375	396	0.92
Non-Cytoplasmic	397	414	0.89
Transmembrane Helix	415	439	0.83
Cytoplasmic	440	456	0.90
Transmembrane Helix	457	477	0.89
Non-Cytoplasmic	478	505	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQHLTSFPV LLPMLAAVIL LMPPCGKSIA IRRVASVVLS IITFLASLAL LLKVQVDGTQ  60
   61 VYAIGDWSAP FGIVLVADPL STLLACLTAL LGIVCVLYAC AGDDDKGSFF HPLVHFLVLG 120
  121 VNGAFLTGDA FNLFVFFEVL LIASYSLLMH GGDKKNTRAA LQYVIMNLVG SAVFLIALGI 180
  181 LYGVLGTLNM ADMAQKVALL QGDDVYLAKI GGLLLLVVFA LKGALLPLHL WLPNTYATAM 240
  241 PIVAALFAIM TKVGVYSMMR VYTLIFGDEA GELSHMAQSW LWWLALATIA MGTIGVIASK 300
  301 DLRKLAANLV IVSVGTLVAL VAVQTVEASS AAIYYLVHST LVTAALFILA DLIGRQRGNV 360
  361 ADRITAGPPL TQPRLLGVCF LIAGIAVIGM PPLSGFIGKV WLLKATLNAE YTFVFWPLYL 420
  421 LASLAILIGV SKAGSTVFWH HQVQATENIG QERVHPAQLV ALIILISGAP LMSFFAGPLS 480
  481 EYAIDAATQL HDFNHNIKVI LSGGQ