YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281079, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQKDFPSD NSPPTSYSQS EEKLNVISHA FGLLLSCFAL FLLLNNSHGE LSRIISFSIF  60
   61 ATSGILLFLA STIYHSLTNK RAKTLFKLLD HCAIYLLIAG TYTPLFAITL AGPLGYTLLV 120
  121 FIWLFALSGV LFKIKFGNKY KKISLATYLG MGFISLGILG ELYEKLPEQA IGLLALGGLI 180
  181 YSLGVFFYVK KTIPYTHAIW HLFVLGGVTC HFLMIYWYV

Type	Start	End	Confidence
Cytoplasmic	1	25	0.95
Transmembrane Helix	26	44	0.96
Non-Cytoplasmic	45	53	0.78
Transmembrane Helix	54	75	0.93
Cytoplasmic	76	87	0.81
Transmembrane Helix	88	108	0.88
Non-Cytoplasmic	109	113	0.66
Transmembrane Helix	114	134	0.89
Cytoplasmic	135	143	0.81
Transmembrane Helix	144	163	0.93
Non-Cytoplasmic	164	169	0.88
Transmembrane Helix	170	189	0.97
Cytoplasmic	190	197	0.87
Transmembrane Helix	198	218	0.92
Non-Cytoplasmic	219	219	0.99