YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146779, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQRIITAL ILAPAAISAI FYLPINYFAG LLMAIIAIGS WEWARFMGLV NTIQRLGYVV  60
   61 ITSALIATLW FLLPVDETWL VITGVQHEIT SLLWLSVIWW LFAALLMFSY PKSSAFWSNN 120
  121 KFIIAMFGWL TLVPTWLAFM VLRTNNYVLD EFQGAQLLMY LFMLVWSADV GAYFVGKSLG 180
  181 KHKLMPNVSP GKTIEGFLGG VVCAAILTGI VGVSLQWSND KFITALLVTL LITSISVLGD 240
  241 LTESMFKRQA GVKDSGSILP GHGGILDRID SLTATAPVFA LCYLLLA

Type	Start	End	Confidence
Cytoplasmic	1	5	0.69
Transmembrane Helix	6	25	0.76
Non-Cytoplasmic	26	27	0.58
Transmembrane Helix	28	46	0.84
Cytoplasmic	47	55	0.74
Transmembrane Helix	56	74	0.94
Non-Cytoplasmic	75	89	0.86
Transmembrane Helix	90	110	0.91
Cytoplasmic	111	121	0.81
Transmembrane Helix	122	142	0.91
Non-Cytoplasmic	143	156	0.85
Transmembrane Helix	157	176	0.95
Cytoplasmic	177	195	0.87
Transmembrane Helix	196	215	0.95
Non-Cytoplasmic	216	221	0.83
Transmembrane Helix	222	242	0.91
Cytoplasmic	243	287	0.88