YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	60	0.83
Transmembrane Helix	61	82	0.89
Cytoplasmic	83	89	0.79
Transmembrane Helix	90	110	0.95
Non-Cytoplasmic	111	116	0.85
Transmembrane Helix	117	140	0.90
Cytoplasmic	141	157	0.91
Transmembrane Helix	158	181	0.87
Non-Cytoplasmic	182	204	0.93
Transmembrane Helix	205	226	0.91
Cytoplasmic	227	257	0.96
Transmembrane Helix	258	282	0.87
Non-Cytoplasmic	283	299	0.82
Transmembrane Helix	300	318	0.88
Cytoplasmic	319	325	0.70
Transmembrane Helix	326	344	0.93
Non-Cytoplasmic	345	350	0.70
Transmembrane Helix	351	372	0.92
Cytoplasmic	373	379	0.84
Transmembrane Helix	380	399	0.92
Non-Cytoplasmic	400	406	0.68
Transmembrane Helix	407	428	0.90
Cytoplasmic	429	436	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSGSADLS QFKAQSDSGQ SYNFTLVVLT SLFFMWGFIA CLNDILIPHL KNVFSLNYTQ  60
   61 AMLIQFCFFS AYFIVSMPAA ALIKKVGYKF GIVSGLSIAG IGCVLFYPAA GAQSYPLFLF 120
  121 ALFVLASGIT CLQVSANPYV ASLGRAETAS SRLNLTQAFN SLGTTVAPFF GGLFILSAVS 180
  181 LGAEQIAQLS VAEQAAAKLQ EAQAVQIPYL VLAGILFGLA AIFTFLKLPK IESIETDDSC 240
  241 ADAVSLKEQP SAWKTPHLML GALGIFVYVG AEVSIGSFLI SFLGEDNIAG LAEAQAANYI 300
  301 AYYWGGAMVG RFIGAALMRF VAANKILTVN AISAVILLIV AITSSGQVAM WAILSVGLCN 360
  361 SIMFPTIFTL AVNRLGKATG QGSGILCLSI AGGALIPLLQ GVLADAIGIQ MAFVLPVMCY 420
  421 LYIMFYGVKG SRIGLQ