YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146714, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	37	0.93
Non-Cytoplasmic	38	68	0.78
Transmembrane Helix	69	95	0.80
Cytoplasmic	96	96	0.51
Transmembrane Helix	97	111	0.49
Non-Cytoplasmic	112	112	0.23
Transmembrane Helix	113	146	0.73
Cytoplasmic	147	192	0.67
Transmembrane Helix	193	213	0.87
Non-Cytoplasmic	214	221	0.61
Transmembrane Helix	222	243	0.87
Cytoplasmic	244	247	0.68
Transmembrane Helix	248	270	0.64
Non-Cytoplasmic	271	308	0.64
Transmembrane Helix	309	332	0.88
Cytoplasmic	333	348	0.67
Transmembrane Helix	349	374	0.73
Non-Cytoplasmic	375	377	0.52
Transmembrane Helix	378	398	0.79
Cytoplasmic	399	438	0.83
Transmembrane Helix	439	459	0.92
Non-Cytoplasmic	460	467	0.75
Transmembrane Helix	468	489	0.87
Cytoplasmic	490	503	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELQRVKNA DYALGYWQKV TLSIWVIALV IIPFADIEIV SFDPFLELTR MVNGLVTPDF  60
   61 FATEYLFQAI IQTVNFAIIG VCLGLVLGAP LALIYQHPIV SSCCAFLRAI HEIFWALLFL 120
  121 QVFGLSPITG ILAIAIPFAA TFARVFHDII NQSSDNPLES IDSRADIISR FTYGKIAQVM 180
  181 PQLMSYTRYR FECALRSSAV LGFIGMPTLG FYMETAFRQG NYSEGAALLI IFIALIGSIR 240
  241 YWCPPKSLGI YLVIACVTLV DIPNVDSSLL VRFISQDILP PALVNVTTLA EVQWSSLTAW 300
  301 FSTILSNQAI PGAIATITLA LLALAATHFI TLSAHAIASK HLWPTPLTWL GRFILLIGRS 360
  361 VPEYILAFIF LMLLGPSMLP AVIALAIHNG CVIAYLAVKQ SNAITPQQMQ MTRLNEFNYH 420
  421 IMPTIYPNMM ALMFYRFEII VRETAVFGIL GIMTLGFYID SNFSEIRYSN ALVLITCTAL 480
  481 LNVAIDIISR RLLKFPQTSK TRC