YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280969, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.82
Transmembrane Helix	10	30	0.91
Cytoplasmic	31	38	0.82
Transmembrane Helix	39	56	0.95
Non-Cytoplasmic	57	62	0.81
Transmembrane Helix	63	82	0.94
Cytoplasmic	83	92	0.88
Transmembrane Helix	93	113	0.93
Non-Cytoplasmic	114	135	0.86
Transmembrane Helix	136	155	0.95
Cytoplasmic	156	171	0.90
Transmembrane Helix	172	190	0.91
Non-Cytoplasmic	191	196	0.77
Transmembrane Helix	197	215	0.93
Cytoplasmic	216	223	0.71
Transmembrane Helix	224	243	0.86
Non-Cytoplasmic	244	247	0.76
Transmembrane Helix	248	268	0.90
Cytoplasmic	269	469	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTQIASNG FISAAYVIAA LLFIFSLAGL SKQESAQRGN LFGMAGMAIA LLATIIDPRV  60
   61 SNVFIIIIAM VVGSGIGLRL ANKVEMTQMP ELVAILHSFV GLAAMLVGFN SYFDSGHSVV 120
  121 LTAAQHTAMK IHLSEIFIGI FIGAVTFTGS IVAFAKLRGT ISSSALMLPH RHKMNLAAGI 180
  181 FSFLLLLSFV NHDGSNIALF LMTITALVFG WHLVASIGGA DMPVVVSMLN SYSGWAAAAA 240
  241 GFMLSNDLLI ITGALVGSSG AILSYIMCKA MNRSFISVIA GGFGTDVVID NDKDYGEHTE 300
  301 VHAEAVADLL RNAKSVIIAP GYGMAVSQAQ YPVYELTQQL MNKGIKVRFA IHPVAGRLPG 360
  361 HMNVLLAEAK VPYDIVLGMD EINDDFVEAD VVLVIGANDT VNPAAAEDPT SPIAGMPVLE 420
  421 VWNAKEVIVF KRSMSTGYAG VQNPLFFKDN TQMLFGDAKD SVEQIFRAL