YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146699, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEIAPPNS NDADITDNTD EQEAAAVLKA ERKAEYKELA IQGLWKNNPG LVQLLGLCPL  60
   61 LAVTSTVTNA LGLGLATMLV LICSNITVSA IRHWVPKEIR IPIFVLIIAA FVTCVQLLMN 120
  121 AFTYGIYQSL GIFLPLIVTN CAIIGRAEAY ASKNPIKQSA FDGLMMGSGF AIILILLGVI 180
  181 REILGQGTLF DGANLLLGDW ASVLRIEVMQ LDSQFLLAIL PPGAFIAMGI LIALKNAIDS 240
  241 HIKSKKVVDT EQVIERVRVN FDS

Type	Start	End	Confidence
Cytoplasmic	1	46	0.74
Transmembrane Helix	47	65	0.73
Non-Cytoplasmic	66	69	0.58
Transmembrane Helix	70	91	0.84
Cytoplasmic	92	100	0.77
Transmembrane Helix	101	119	0.95
Non-Cytoplasmic	120	125	0.60
Transmembrane Helix	126	147	0.85
Cytoplasmic	148	160	0.83
Transmembrane Helix	161	180	0.92
Non-Cytoplasmic	181	214	0.88
Transmembrane Helix	215	236	0.90
Cytoplasmic	237	263	0.95