YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFILKLFKK IIDAVGSLCS IIMILMVLNV FYDVVSRYFF NDVSIGMQEL EWHLFAAMFM  60
   61 FGIGYTLKED GHVRVDVFYD RMSEHSQAII NILGAIFFAL PITLLVLYYG SDYALEAFQM 120
  121 GEGSPDPGGL PYRWIVRSII PFSSAFLLLC ILYVTLKNIS LLNPPSQSKQ GQPS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	32	0.92
Non-Cytoplasmic	33	49	0.90
Transmembrane Helix	50	67	0.94
Cytoplasmic	68	87	0.94
Transmembrane Helix	88	110	0.94
Non-Cytoplasmic	111	133	0.96
Transmembrane Helix	134	156	0.90
Cytoplasmic	157	174	0.95