YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146616, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFTLRRLS LFIFTMLVLT LLSFSLSFLF PGDTVINHSG QINASATELA HLNQVYQMDK  60
   61 SIFNQYGAYL THILNGDFGQ SMASQSPISN EIIKLLPATI ELSLVALLIA MLVGIPLGFI 120
  121 AAIKHNKTSD NVILSLAMLG YSIPVFWLGL LAILVFSIGL GWLPSAGQIS LLFEIEFVTG 180
  181 IQFFDILLSD SPYKWQAFRD ASAHMILPAC VIALAPATIF IRLSRASMIE VLAASYIRAA 240
  241 RAKGLSFQQI IFRHAIRNAL IQIIRHVGLQ FANLVTIAMV TEVIFSWPGI GRWLIDSIYQ 300
  301 RDYTAIQSGL LVLSCFIFIV HILTDFIYAA LNPLARGNNH GS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	30	0.74
Non-Cytoplasmic	31	101	0.95
Transmembrane Helix	102	123	0.91
Cytoplasmic	124	138	0.79
Transmembrane Helix	139	163	0.83
Non-Cytoplasmic	164	200	0.84
Transmembrane Helix	201	223	0.88
Cytoplasmic	224	266	0.78
Transmembrane Helix	267	290	0.81
Non-Cytoplasmic	291	304	0.73
Transmembrane Helix	305	328	0.86
Cytoplasmic	329	342	0.72