YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.65
Transmembrane Helix	10	31	0.63
Non-Cytoplasmic	32	337	0.65
Transmembrane Helix	338	358	0.63
Cytoplasmic	359	363	0.58
Transmembrane Helix	364	383	0.88
Non-Cytoplasmic	384	389	0.67
Transmembrane Helix	390	411	0.90
Cytoplasmic	412	442	0.79
Transmembrane Helix	443	464	0.86
Non-Cytoplasmic	465	480	0.81
Transmembrane Helix	481	502	0.93
Cytoplasmic	503	869	0.68
Transmembrane Helix	870	891	0.87
Non-Cytoplasmic	892	896	0.57
Transmembrane Helix	897	917	0.92
Cytoplasmic	918	923	0.57
Transmembrane Helix	924	948	0.88
Non-Cytoplasmic	949	982	0.65
Transmembrane Helix	983	1005	0.87
Cytoplasmic	1006	1013	0.59
Transmembrane Helix	1014	1038	0.87
Non-Cytoplasmic	1039	1052	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAAIIRWSV GNRFFVILAT MILVGAGLYA VKNTPIDALP DLSDVQVIIK TSYPGQAPQV  60
   61 VEDQVTYPLT TAMLSVPGAV TVRGFSFFGD SYVYIIFEED TDLYWARSRV LEYLSQVSPN 120
  121 LPSDAKPQLG PDATGVGWVY LYSLIDKTGQ HDLSQLRSLQ DWFLKYELQT VKGVSEVTAL 180
  181 GGMVKQYQVQ VDPDKLRAFG IPLSLIQTAI KQGNQEIGAS VVEMAEAEYM VRATGYLKGV 240
  241 EDLENIPLGV NENGTPLLLK DVAQIGTGPQ MRRGIAELNG EGETVGGIVV MRFGENAQQV 300
  301 INGVKVKLEQ LKKGLPEGVE IVPVYDRSAL IERAVSNLAM KLLEEFGVVA LVCVIFLFHL 360
  361 RSSLVVIISI PVGILTAFIV MHAQGLNANI MSLGGIAIAI GAMVDGAIVM IENMHKHMER 420
  421 EPQDKPLSNE KRWQVVVDSA SEVGPALFFS LLIITVSFVP VFTLEAQEGR MFSPLAYTKT 480
  481 YAMAAAAALA ITLVPVLMGY FIRGKVLAEH KNPVNKFLTA LYLPALKAVL RFPKTTLSAA 540
  541 VVVFIIGLYP LDKIGSEFIP PLDEGDLMYM PTTYPGISIG QARQLLQQTD KLIKTVPEVK 600
  601 TVFGKMGRAE TATDPAPLTM IETFIQFKPK SEWREGMTIA SLKKELDALV KLPGVTNAWV 660
  661 MPIKTRIDML ATGIKTPVGI KISGPKLETI QEIGQQLESI LAKVPGTASV YSERVAGGRY 720
  721 IKVDIQRGKA ARYGLNISDI QQVVATAIGG MNVTNTVEGL ERYPVSLRYP QDYRDSPEQL 780
  781 SQLPIVTPNG QRISLGDVAH VFIEDGPPGI KSENARLTGW AFIDLADTKG VDVGSYVTNA 840
  841 QTVLDRELKL PTGYSITWAG QYEYMQRAKA KLTYVVPLTL AIIIVLLYLN FRNVIEVAMI 900
  901 LGTLPLAMVG SIWLMYLQGF NFSVAVGVGF IALAGVAVEI GVIMLVYLNQ AYNALIADNT 960
  961 RAGKITTKAE VLQAVLHGAG LRIRPIMMTG GTVIVGLLPI LYGTGTGSEV MSRIAAPMVG1020
 1021 GMASAMLLTL LVLPALYYLW RSANLPTTDV VV